test: stabilize bun coverage reporting

.github/workflows/ci.yml

@@ -61,6 +61,16 @@ jobs:
       - name: Test suite (source)
         run: bun run test:fast
 
+      - name: Coverage suite (maintained source lane)
+        run: bun run test:coverage:src
+
+      - name: Upload coverage artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-src
+          path: coverage/test-src/lcov.info
+          if-no-files-found: error
+
       - name: Launcher smoke suite (source)
         run: bun run test:launcher:smoke:src
 

.github/workflows/release.yml

@@ -49,6 +49,16 @@ jobs:
       - name: Test suite (source)
         run: bun run test:fast
 
+      - name: Coverage suite (maintained source lane)
+        run: bun run test:coverage:src
+
+      - name: Upload coverage artifact
+        uses: actions/upload-artifact@v4
+        with:
+          name: coverage-test-src
+          path: coverage/test-src/lcov.info
+          if-no-files-found: error
+
       - name: Launcher smoke suite (source)
         run: bun run test:launcher:smoke:src
 

Backlog.md

@@ -34,6 +34,8 @@ None.
 | SM-008 | P3  | todo   | subtitles         | Add core subtitle-position persistence/path tests                |
 | SM-009 | P3  | todo   | tokenizer         | Add tests for JLPT token filter                                  |
 | SM-010 | P1  | todo   | immersion-tracker | Refactor storage + immersion-tracker service into focused modules    |
+| SM-011 | P1  | done   | tests             | Add coverage reporting for maintained test lanes                 |
+| SM-012 | P2  | done   | config/runtime    | Replace JSON serialize-clone helpers with structured cloning     |
 
 ## Icebox
 
@@ -45,7 +47,7 @@ None.
 
 Title: Add tests for CLI parser and args normalizer
 Priority: P1
-Status: todo
+Status: done
 Scope:
 
 - `launcher/config/cli-parser-builder.ts`
@@ -192,3 +194,43 @@ Acceptance:
 - YouTube code split into pure utilities, a stateful manager (`YouTubeManager`), and a dedicated write queue (`WriteQueue`)
 - removed `storage.ts` is replaced with focused modules and updated imports
 - no API or migration regressions; existing tests for trackers/storage coverage remain green or receive focused updates
+
+### SM-011
+
+Title: Add coverage reporting for maintained test lanes
+Priority: P1
+Status: done
+Scope:
+
+- `package.json`
+- CI workflow files under `.github/`
+- `docs/workflow/verification.md`
+  Acceptance:
+- at least one maintained test lane emits machine-readable coverage output
+- CI surfaces coverage as an artifact, summary, or check output
+- local contributor path for coverage is documented
+- chosen coverage path works with Bun/TypeScript lanes already maintained by the repo
+Implementation note:
+- Added `bun run test:coverage:src` for the maintained source lane via a sharded coverage runner, with merged LCOV output at `coverage/test-src/lcov.info` and CI/release artifact upload as `coverage-test-src`.
+
+### SM-012
+
+Title: Replace JSON serialize-clone helpers with structured cloning
+Priority: P2
+Status: todo
+Scope:
+
+- `src/runtime-options.ts`
+- `src/config/definitions.ts`
+- `src/config/service.ts`
+- `src/main/controller-config-update.ts`
+  Acceptance:
+- runtime/config clone helpers stop using `JSON.parse(JSON.stringify(...))`
+- replacement preserves current behavior for plain config/runtime objects
+- focused tests cover clone/merge behavior that could regress during the swap
+- no new clone helper is introduced in these paths without a documented reason
+
+Done:
+
+- replaced JSON serialize-clone call sites in runtime/config/controller update paths with `structuredClone`
+- updated focused tests and fixtures to cover detached clone behavior and guard against regressions

changes/2026-03-27-sm-011-coverage-reporting.md

@@ -0,0 +1,5 @@
+type: internal
+area: release
+
+- Added a maintained source coverage lane that shards Bun coverage one test file at a time and merges LCOV output into `coverage/test-src/lcov.info`.
+- CI and release quality-gate now upload the merged source-lane LCOV artifact for inspection.

docs/README.md

@@ -21,6 +21,7 @@ Read when: you need internal architecture, workflow, verification, or release gu
 
 - New feature or refactor: [Workflow](./workflow/README.md), then [Architecture](./architecture/README.md)
 - Test/build/release work: [Verification](./workflow/verification.md), then [Release Guide](./RELEASING.md)
+- Coverage lane selection or LCOV artifact path: [Verification](./workflow/verification.md)
 - “What owns this behavior?”: [Domains](./architecture/domains.md)
 - “Can these modules depend on each other?”: [Layering](./architecture/layering.md)
 - “What doc should exist for this?”: [Catalog](./knowledge-base/catalog.md)

docs/workflow/verification.md

@@ -31,8 +31,15 @@ bun run docs:build
 - Config/schema/defaults: `bun run test:config`, then `bun run generate:config-example` if template/defaults changed
 - Launcher/plugin: `bun run test:launcher` or `bun run test:env`
 - Runtime-compat / compiled behavior: `bun run test:runtime:compat`
+- Coverage for the maintained source lane: `bun run test:coverage:src`
 - Deep/local full gate: default handoff gate above
 
+## Coverage Reporting
+
+- `bun run test:coverage:src` runs the maintained `test:src` lane through a sharded coverage runner: one Bun coverage process per test file, then merged LCOV output.
+- Machine-readable output lands at `coverage/test-src/lcov.info`.
+- CI and release quality-gate runs upload that LCOV file as the `coverage-test-src` artifact.
+
 ## Rules
 
 - Capture exact failing command and error when verification breaks.

package.json

@@ -52,6 +52,8 @@
     "test:immersion:sqlite:dist": "bun test dist/core/services/immersion-tracker-service.test.js dist/core/services/immersion-tracker/storage-session.test.js",
     "test:immersion:sqlite": "bun run tsc && bun run test:immersion:sqlite:dist",
     "test:src": "bun scripts/run-test-lane.mjs bun-src-full",
+    "test:coverage:src": "bun run scripts/run-coverage-lane.ts bun-src-full --coverage-dir coverage/test-src",
+    "test:coverage:subtitle:src": "bun test --coverage --coverage-reporter=text --coverage-reporter=lcov --coverage-dir coverage/test-subtitle src/core/services/subsync.test.ts src/subsync/utils.test.ts",
     "test:launcher:unit:src": "bun scripts/run-test-lane.mjs bun-launcher-unit",
     "test:launcher:env:src": "bun run test:launcher:smoke:src && bun run test:plugin:src",
     "test:env": "bun run test:launcher:env:src && bun run test:immersion:sqlite:src",
@@ -63,7 +65,7 @@
     "test:launcher": "bun run test:launcher:src",
     "test:core": "bun run test:core:src",
     "test:subtitle": "bun run test:subtitle:src",
-    "test:fast": "bun run test:config:src && bun run test:core:src && bun run test:docs:kb && bun test src/main-entry-runtime.test.ts src/anki-integration.test.ts src/anki-integration/anki-connect-proxy.test.ts src/anki-integration/field-grouping-workflow.test.ts src/anki-integration/field-grouping.test.ts src/anki-integration/field-grouping-merge.test.ts src/release-workflow.test.ts src/ci-workflow.test.ts scripts/build-changelog.test.ts scripts/mkv-to-readme-video.test.ts scripts/update-aur-package.test.ts && bun test src/core/services/immersion-tracker/__tests__/query.test.ts src/core/services/immersion-tracker/__tests__/query-split-modules.test.ts && bun run tsc && bun test dist/main/runtime/registry.test.js",
+    "test:fast": "bun run test:config:src && bun run test:core:src && bun run test:docs:kb && bun test src/main-entry-runtime.test.ts src/anki-integration.test.ts src/anki-integration/anki-connect-proxy.test.ts src/anki-integration/field-grouping-workflow.test.ts src/anki-integration/field-grouping.test.ts src/anki-integration/field-grouping-merge.test.ts src/release-workflow.test.ts src/ci-workflow.test.ts scripts/build-changelog.test.ts scripts/mkv-to-readme-video.test.ts scripts/run-coverage-lane.test.ts scripts/update-aur-package.test.ts && bun test src/core/services/immersion-tracker/__tests__/query.test.ts src/core/services/immersion-tracker/__tests__/query-split-modules.test.ts && bun run tsc && bun test dist/main/runtime/registry.test.js",
     "generate:config-example": "bun run src/generate-config-example.ts",
     "verify:config-example": "bun run src/verify-config-example.ts",
     "start": "bun run build && electron . --start",

scripts/run-coverage-lane.test.ts

@@ -0,0 +1,61 @@
+import assert from 'node:assert/strict';
+import test from 'node:test';
+
+import { mergeLcovReports } from './run-coverage-lane';
+
+test('mergeLcovReports combines duplicate source-file counters across shard outputs', () => {
+  const merged = mergeLcovReports([
+    [
+      'SF:src/example.ts',
+      'FN:10,alpha',
+      'FNDA:1,alpha',
+      'DA:10,1',
+      'DA:11,0',
+      'BRDA:10,0,0,1',
+      'BRDA:10,0,1,-',
+      'end_of_record',
+      '',
+    ].join('\n'),
+    [
+      'SF:src/example.ts',
+      'FN:10,alpha',
+      'FN:20,beta',
+      'FNDA:2,alpha',
+      'FNDA:1,beta',
+      'DA:10,2',
+      'DA:11,1',
+      'DA:20,1',
+      'BRDA:10,0,0,0',
+      'BRDA:10,0,1,1',
+      'end_of_record',
+      '',
+    ].join('\n'),
+  ]);
+
+  assert.match(merged, /SF:src\/example\.ts/);
+  assert.match(merged, /FN:10,alpha/);
+  assert.match(merged, /FN:20,beta/);
+  assert.match(merged, /FNDA:3,alpha/);
+  assert.match(merged, /FNDA:1,beta/);
+  assert.match(merged, /FNF:2/);
+  assert.match(merged, /FNH:2/);
+  assert.match(merged, /DA:10,3/);
+  assert.match(merged, /DA:11,1/);
+  assert.match(merged, /DA:20,1/);
+  assert.match(merged, /LF:3/);
+  assert.match(merged, /LH:3/);
+  assert.match(merged, /BRDA:10,0,0,1/);
+  assert.match(merged, /BRDA:10,0,1,1/);
+  assert.match(merged, /BRF:2/);
+  assert.match(merged, /BRH:2/);
+});
+
+test('mergeLcovReports keeps distinct source files as separate records', () => {
+  const merged = mergeLcovReports([
+    ['SF:src/a.ts', 'DA:1,1', 'end_of_record', ''].join('\n'),
+    ['SF:src/b.ts', 'DA:2,1', 'end_of_record', ''].join('\n'),
+  ]);
+
+  assert.match(merged, /SF:src\/a\.ts[\s\S]*end_of_record/);
+  assert.match(merged, /SF:src\/b\.ts[\s\S]*end_of_record/);
+});

scripts/run-coverage-lane.ts

@@ -0,0 +1,296 @@
+import { existsSync, mkdirSync, readFileSync, readdirSync, rmSync, writeFileSync } from 'node:fs';
+import { spawnSync } from 'node:child_process';
+import { fileURLToPath } from 'node:url';
+import { join, relative, resolve } from 'node:path';
+
+type LaneConfig = {
+  roots: string[];
+  include: string[];
+  exclude: Set<string>;
+};
+
+type LcovRecord = {
+  sourceFile: string;
+  functions: Map<string, number>;
+  functionHits: Map<string, number>;
+  lines: Map<number, number>;
+  branches: Map<string, { line: number; block: string; branch: string; hits: number | null }>;
+};
+
+const repoRoot = resolve(fileURLToPath(new URL('..', import.meta.url)));
+
+const lanes: Record<string, LaneConfig> = {
+  'bun-src-full': {
+    roots: ['src'],
+    include: ['.test.ts', '.type-test.ts'],
+    exclude: new Set([
+      'src/core/services/anki-jimaku-ipc.test.ts',
+      'src/core/services/ipc.test.ts',
+      'src/core/services/overlay-manager.test.ts',
+      'src/main/config-validation.test.ts',
+      'src/main/runtime/registry.test.ts',
+      'src/main/runtime/startup-config.test.ts',
+    ]),
+  },
+  'bun-launcher-unit': {
+    roots: ['launcher'],
+    include: ['.test.ts'],
+    exclude: new Set(['launcher/smoke.e2e.test.ts']),
+  },
+};
+
+function collectFiles(rootDir: string, includeSuffixes: string[], excludeSet: Set<string>): string[] {
+  const out: string[] = [];
+  const visit = (currentDir: string) => {
+    for (const entry of readdirSync(currentDir, { withFileTypes: true })) {
+      const fullPath = resolve(currentDir, entry.name);
+      if (entry.isDirectory()) {
+        visit(fullPath);
+        continue;
+      }
+      const relPath = relative(repoRoot, fullPath).replaceAll('\\', '/');
+      if (excludeSet.has(relPath)) continue;
+      if (includeSuffixes.some((suffix) => relPath.endsWith(suffix))) {
+        out.push(relPath);
+      }
+    }
+  };
+
+  visit(resolve(repoRoot, rootDir));
+  out.sort();
+  return out;
+}
+
+function getLaneFiles(laneName: string): string[] {
+  const lane = lanes[laneName];
+  if (!lane) {
+    throw new Error(`Unknown coverage lane: ${laneName}`);
+  }
+  const files = lane.roots.flatMap((rootDir) => collectFiles(rootDir, lane.include, lane.exclude));
+  if (files.length === 0) {
+    throw new Error(`No test files found for coverage lane: ${laneName}`);
+  }
+  return files;
+}
+
+function parseCoverageDirArg(argv: string[]): string {
+  for (let index = 0; index < argv.length; index += 1) {
+    if (argv[index] === '--coverage-dir') {
+      const next = argv[index + 1];
+      if (!next) {
+        throw new Error('Missing value for --coverage-dir');
+      }
+      return next;
+    }
+  }
+  return 'coverage';
+}
+
+function parseLcovReport(report: string): LcovRecord[] {
+  const records: LcovRecord[] = [];
+  let current: LcovRecord | null = null;
+
+  const ensureCurrent = (): LcovRecord => {
+    if (!current) {
+      throw new Error('Malformed lcov report: record data before SF');
+    }
+    return current;
+  };
+
+  for (const rawLine of report.split(/\r?\n/)) {
+    const line = rawLine.trim();
+    if (!line) continue;
+    if (line.startsWith('TN:')) {
+      continue;
+    }
+    if (line.startsWith('SF:')) {
+      current = {
+        sourceFile: line.slice(3),
+        functions: new Map(),
+        functionHits: new Map(),
+        lines: new Map(),
+        branches: new Map(),
+      };
+      continue;
+    }
+    if (line === 'end_of_record') {
+      if (current) {
+        records.push(current);
+        current = null;
+      }
+      continue;
+    }
+    if (line.startsWith('FN:')) {
+      const [lineNumber, ...nameParts] = line.slice(3).split(',');
+      ensureCurrent().functions.set(nameParts.join(','), Number(lineNumber));
+      continue;
+    }
+    if (line.startsWith('FNDA:')) {
+      const [hits, ...nameParts] = line.slice(5).split(',');
+      ensureCurrent().functionHits.set(nameParts.join(','), Number(hits));
+      continue;
+    }
+    if (line.startsWith('DA:')) {
+      const [lineNumber, hits] = line.slice(3).split(',');
+      ensureCurrent().lines.set(Number(lineNumber), Number(hits));
+      continue;
+    }
+    if (line.startsWith('BRDA:')) {
+      const [lineNumber, block, branch, hits] = line.slice(5).split(',');
+      ensureCurrent().branches.set(`${lineNumber}:${block}:${branch}`, {
+        line: Number(lineNumber),
+        block,
+        branch,
+        hits: hits === '-' ? null : Number(hits),
+      });
+    }
+  }
+
+  if (current) {
+    records.push(current);
+  }
+
+  return records;
+}
+
+export function mergeLcovReports(reports: string[]): string {
+  const merged = new Map<string, LcovRecord>();
+
+  for (const report of reports) {
+    for (const record of parseLcovReport(report)) {
+      let target = merged.get(record.sourceFile);
+      if (!target) {
+        target = {
+          sourceFile: record.sourceFile,
+          functions: new Map(),
+          functionHits: new Map(),
+          lines: new Map(),
+          branches: new Map(),
+        };
+        merged.set(record.sourceFile, target);
+      }
+
+      for (const [name, line] of record.functions) {
+        if (!target.functions.has(name)) {
+          target.functions.set(name, line);
+        }
+      }
+
+      for (const [name, hits] of record.functionHits) {
+        target.functionHits.set(name, (target.functionHits.get(name) ?? 0) + hits);
+      }
+
+      for (const [lineNumber, hits] of record.lines) {
+        target.lines.set(lineNumber, (target.lines.get(lineNumber) ?? 0) + hits);
+      }
+
+      for (const [branchKey, branchRecord] of record.branches) {
+        const existing = target.branches.get(branchKey);
+        if (!existing) {
+          target.branches.set(branchKey, { ...branchRecord });
+          continue;
+        }
+        if (branchRecord.hits === null) {
+          continue;
+        }
+        existing.hits = (existing.hits ?? 0) + branchRecord.hits;
+      }
+    }
+  }
+
+  const chunks: string[] = [];
+  for (const sourceFile of [...merged.keys()].sort()) {
+    const record = merged.get(sourceFile)!;
+    chunks.push(`SF:${record.sourceFile}`);
+
+    const functions = [...record.functions.entries()].sort((a, b) =>
+      a[1] === b[1] ? a[0].localeCompare(b[0]) : a[1] - b[1],
+    );
+    for (const [name, line] of functions) {
+      chunks.push(`FN:${line},${name}`);
+    }
+    for (const [name] of functions) {
+      chunks.push(`FNDA:${record.functionHits.get(name) ?? 0},${name}`);
+    }
+    chunks.push(`FNF:${functions.length}`);
+    chunks.push(`FNH:${functions.filter(([name]) => (record.functionHits.get(name) ?? 0) > 0).length}`);
+
+    const branches = [...record.branches.values()].sort((a, b) =>
+      a.line === b.line
+        ? a.block === b.block
+          ? a.branch.localeCompare(b.branch)
+          : a.block.localeCompare(b.block)
+        : a.line - b.line,
+    );
+    for (const branch of branches) {
+      chunks.push(
+        `BRDA:${branch.line},${branch.block},${branch.branch},${branch.hits === null ? '-' : branch.hits}`,
+      );
+    }
+    chunks.push(`BRF:${branches.length}`);
+    chunks.push(`BRH:${branches.filter((branch) => (branch.hits ?? 0) > 0).length}`);
+
+    const lines = [...record.lines.entries()].sort((a, b) => a[0] - b[0]);
+    for (const [lineNumber, hits] of lines) {
+      chunks.push(`DA:${lineNumber},${hits}`);
+    }
+    chunks.push(`LF:${lines.length}`);
+    chunks.push(`LH:${lines.filter(([, hits]) => hits > 0).length}`);
+    chunks.push('end_of_record');
+  }
+
+  return chunks.length > 0 ? `${chunks.join('\n')}\n` : '';
+}
+
+function runCoverageLane(): number {
+  const laneName = process.argv[2];
+  if (!laneName) {
+    process.stderr.write('Missing coverage lane name\n');
+    return 1;
+  }
+
+  const coverageDir = resolve(repoRoot, parseCoverageDirArg(process.argv.slice(3)));
+  const shardRoot = join(coverageDir, '.shards');
+  mkdirSync(coverageDir, { recursive: true });
+  rmSync(shardRoot, { recursive: true, force: true });
+  mkdirSync(shardRoot, { recursive: true });
+
+  const files = getLaneFiles(laneName);
+  const reports: string[] = [];
+
+  for (const [index, file] of files.entries()) {
+    const shardDir = join(shardRoot, `${String(index + 1).padStart(3, '0')}`);
+    const result = spawnSync(
+      'bun',
+      ['test', '--coverage', '--coverage-reporter=lcov', '--coverage-dir', shardDir, `./${file}`],
+      {
+        cwd: repoRoot,
+        stdio: 'inherit',
+      },
+    );
+
+    if (result.error) {
+      throw result.error;
+    }
+    if ((result.status ?? 1) !== 0) {
+      return result.status ?? 1;
+    }
+
+    const lcovPath = join(shardDir, 'lcov.info');
+    if (!existsSync(lcovPath)) {
+      process.stdout.write(`Skipping empty coverage shard for ${file}\n`);
+      continue;
+    }
+
+    reports.push(readFileSync(lcovPath, 'utf8'));
+  }
+
+  writeFileSync(join(coverageDir, 'lcov.info'), mergeLcovReports(reports), 'utf8');
+  rmSync(shardRoot, { recursive: true, force: true });
+  process.stdout.write(`Merged LCOV written to ${relative(repoRoot, join(coverageDir, 'lcov.info'))}\n`);
+  return 0;
+}
+
+if (import.meta.main) {
+  process.exit(runCoverageLane());
+}

src/anki-integration/known-word-cache.test.ts

@@ -85,13 +85,15 @@ test('KnownWordCacheManager startLifecycle keeps fresh persisted cache without i
     },
   };
   const { manager, calls, statePath, cleanup } = createKnownWordCacheHarness(config);
+  const originalDateNow = Date.now;
 
   try {
+    Date.now = () => 120_000;
     fs.writeFileSync(
       statePath,
       JSON.stringify({
         version: 2,
-        refreshedAtMs: Date.now(),
+        refreshedAtMs: 120_000,
         scope: '{"refreshMinutes":60,"scope":"is:note","fieldsWord":""}',
         words: ['猫'],
         notes: {
@@ -102,12 +104,20 @@ test('KnownWordCacheManager startLifecycle keeps fresh persisted cache without i
     );
 
     manager.startLifecycle();
-    await new Promise((resolve) => setTimeout(resolve, 25));
 
     assert.equal(manager.isKnownWord('猫'), true);
     assert.equal(calls.findNotes, 0);
     assert.equal(calls.notesInfo, 0);
+    assert.equal(
+      (
+        manager as unknown as {
+          getMsUntilNextRefresh: () => number;
+        }
+      ).getMsUntilNextRefresh() > 0,
+      true,
+    );
   } finally {
+    Date.now = originalDateNow;
     manager.stopLifecycle();
     cleanup();
   }
@@ -124,13 +134,15 @@ test('KnownWordCacheManager startLifecycle immediately refreshes stale persisted
     },
   };
   const { manager, calls, statePath, clientState, cleanup } = createKnownWordCacheHarness(config);
+  const originalDateNow = Date.now;
 
   try {
+    Date.now = () => 120_000;
     fs.writeFileSync(
       statePath,
       JSON.stringify({
         version: 2,
-        refreshedAtMs: Date.now() - 61_000,
+        refreshedAtMs: 59_000,
         scope: '{"refreshMinutes":1,"scope":"is:note","fieldsWord":"Word"}',
         words: ['猫'],
         notes: {
@@ -156,6 +168,7 @@ test('KnownWordCacheManager startLifecycle immediately refreshes stale persisted
     assert.equal(manager.isKnownWord('猫'), false);
     assert.equal(manager.isKnownWord('犬'), true);
   } finally {
+    Date.now = originalDateNow;
     manager.stopLifecycle();
     cleanup();
   }

src/anki-integration/polling.test.ts

@@ -4,35 +4,41 @@ import test from 'node:test';
 import { PollingRunner } from './polling';
 
 test('polling runner records newly added cards after initialization', async () => {
+  const originalDateNow = Date.now;
   const recordedCards: number[] = [];
   let tracked = new Set<number>();
   const responses = [
     [10, 11],
     [10, 11, 12, 13],
   ];
-  const runner = new PollingRunner({
+  try {
-    getDeck: () => 'Mining',
+    Date.now = () => 120_000;
-    getPollingRate: () => 250,
+    const runner = new PollingRunner({
-    findNotes: async () => responses.shift() ?? [],
+      getDeck: () => 'Mining',
-    shouldAutoUpdateNewCards: () => true,
+      getPollingRate: () => 250,
-    processNewCard: async () => undefined,
+      findNotes: async () => responses.shift() ?? [],
-    recordCardsAdded: (count) => {
+      shouldAutoUpdateNewCards: () => true,
-      recordedCards.push(count);
+      processNewCard: async () => undefined,
-    },
+      recordCardsAdded: (count) => {
-    isUpdateInProgress: () => false,
+        recordedCards.push(count);
-    setUpdateInProgress: () => undefined,
+      },
-    getTrackedNoteIds: () => tracked,
+      isUpdateInProgress: () => false,
-    setTrackedNoteIds: (noteIds) => {
+      setUpdateInProgress: () => undefined,
-      tracked = noteIds;
+      getTrackedNoteIds: () => tracked,
-    },
+      setTrackedNoteIds: (noteIds) => {
-    showStatusNotification: () => undefined,
+        tracked = noteIds;
-    logDebug: () => undefined,
+      },
-    logInfo: () => undefined,
+      showStatusNotification: () => undefined,
-    logWarn: () => undefined,
+      logDebug: () => undefined,
-  });
+      logInfo: () => undefined,
+      logWarn: () => undefined,
+    });
 
-  await runner.pollOnce();
+    await runner.pollOnce();
-  await runner.pollOnce();
+    await runner.pollOnce();
 
-  assert.deepEqual(recordedCards, [2]);
+    assert.deepEqual(recordedCards, [2]);
+  } finally {
+    Date.now = originalDateNow;
+  }
 });

src/ci-workflow.test.ts

@@ -5,6 +5,10 @@ import { resolve } from 'node:path';
 
 const ciWorkflowPath = resolve(__dirname, '../.github/workflows/ci.yml');
 const ciWorkflow = readFileSync(ciWorkflowPath, 'utf8');
+const packageJsonPath = resolve(__dirname, '../package.json');
+const packageJson = JSON.parse(readFileSync(packageJsonPath, 'utf8')) as {
+  scripts: Record<string, string>;
+};
 
 test('ci workflow lints changelog fragments', () => {
   assert.match(ciWorkflow, /bun run changelog:lint/);
@@ -18,3 +22,17 @@ test('ci workflow checks pull requests for required changelog fragments', () =>
 test('ci workflow verifies generated config examples stay in sync', () => {
   assert.match(ciWorkflow, /bun run verify:config-example/);
 });
+
+test('package scripts expose a sharded maintained source coverage lane with lcov output', () => {
+  assert.equal(
+    packageJson.scripts['test:coverage:src'],
+    'bun run scripts/run-coverage-lane.ts bun-src-full --coverage-dir coverage/test-src',
+  );
+});
+
+test('ci workflow runs the maintained source coverage lane and uploads lcov output', () => {
+  assert.match(ciWorkflow, /name: Coverage suite \(maintained source lane\)/);
+  assert.match(ciWorkflow, /run: bun run test:coverage:src/);
+  assert.match(ciWorkflow, /name: Upload coverage artifact/);
+  assert.match(ciWorkflow, /path: coverage\/test-src\/lcov\.info/);
+});

src/config/config.test.ts

@@ -4,7 +4,7 @@ import * as fs from 'fs';
 import * as os from 'os';
 import * as path from 'path';
 import { ConfigService, ConfigStartupParseError } from './service';
-import { DEFAULT_CONFIG, RUNTIME_OPTION_REGISTRY } from './definitions';
+import { DEFAULT_CONFIG, RUNTIME_OPTION_REGISTRY, deepMergeRawConfig } from './definitions';
 import { generateConfigTemplate } from './template';
 
 function makeTempDir(): string {
@@ -1032,6 +1032,61 @@ test('reloadConfigStrict parse failure does not mutate raw config or warnings',
   assert.deepEqual(service.getWarnings(), beforeWarnings);
 });
 
+test('SM-012 config paths do not use JSON serialize-clone helpers', () => {
+  const definitionsSource = fs.readFileSync(
+    path.join(process.cwd(), 'src/config/definitions.ts'),
+    'utf-8',
+  );
+  const serviceSource = fs.readFileSync(path.join(process.cwd(), 'src/config/service.ts'), 'utf-8');
+
+  assert.equal(definitionsSource.includes('JSON.parse(JSON.stringify('), false);
+  assert.equal(serviceSource.includes('JSON.parse(JSON.stringify('), false);
+});
+
+test('getRawConfig returns a detached clone', () => {
+  const dir = makeTempDir();
+  fs.writeFileSync(
+    path.join(dir, 'config.jsonc'),
+    `{
+      "ankiConnect": {
+        "tags": ["SubMiner"]
+      }
+    }`,
+    'utf-8',
+  );
+
+  const service = new ConfigService(dir);
+  const raw = service.getRawConfig();
+  raw.ankiConnect!.tags!.push('mutated');
+
+  assert.deepEqual(service.getRawConfig().ankiConnect?.tags, ['SubMiner']);
+});
+
+test('deepMergeRawConfig returns a detached merged clone', () => {
+  const base = {
+    ankiConnect: {
+      tags: ['SubMiner'],
+      behavior: {
+        autoUpdateNewCards: true,
+      },
+    },
+  };
+
+  const merged = deepMergeRawConfig(base, {
+    ankiConnect: {
+      behavior: {
+        autoUpdateNewCards: false,
+      },
+    },
+  });
+
+  merged.ankiConnect!.tags!.push('mutated');
+  merged.ankiConnect!.behavior!.autoUpdateNewCards = true;
+
+  assert.deepEqual(base.ankiConnect?.tags, ['SubMiner']);
+  assert.equal(base.ankiConnect?.behavior?.autoUpdateNewCards, true);
+});
+
 test('warning emission order is deterministic across reloads', () => {
   const dir = makeTempDir();
   const configPath = path.join(dir, 'config.jsonc');

src/config/definitions.ts

@@ -84,11 +84,11 @@ export const CONFIG_OPTION_REGISTRY = [
 export { CONFIG_TEMPLATE_SECTIONS };
 
 export function deepCloneConfig(config: ResolvedConfig): ResolvedConfig {
-  return JSON.parse(JSON.stringify(config)) as ResolvedConfig;
+  return structuredClone(config);
 }
 
 export function deepMergeRawConfig(base: RawConfig, patch: RawConfig): RawConfig {
-  const clone = JSON.parse(JSON.stringify(base)) as Record<string, unknown>;
+  const clone = structuredClone(base) as Record<string, unknown>;
   const patchObject = patch as Record<string, unknown>;
 
   const mergeInto = (target: Record<string, unknown>, source: Record<string, unknown>): void => {

src/config/service.ts

@@ -61,7 +61,7 @@ export class ConfigService {
   }
 
   getRawConfig(): RawConfig {
-    return JSON.parse(JSON.stringify(this.rawConfig)) as RawConfig;
+    return structuredClone(this.rawConfig);
   }
 
   getWarnings(): ConfigValidationWarning[] {

src/core/services/immersion-tracker/maintenance.test.ts

@@ -8,7 +8,6 @@ import {
   pruneRawRetention,
   pruneRollupRetention,
   runOptimizeMaintenance,
-  toMonthKey,
 } from './maintenance';
 import { ensureSchema } from './storage';
 
@@ -31,9 +30,9 @@ test('pruneRawRetention uses session retention separately from telemetry retenti
 
   try {
     ensureSchema(db);
-    const nowMs = 90 * 86_400_000;
+    const nowMs = 1_000_000_000;
-    const staleEndedAtMs = nowMs - 40 * 86_400_000;
+    const staleEndedAtMs = nowMs - 400_000_000;
-    const keptEndedAtMs = nowMs - 5 * 86_400_000;
+    const keptEndedAtMs = nowMs - 50_000_000;
 
     db.exec(`
       INSERT INTO imm_videos (
@@ -49,14 +48,14 @@ test('pruneRawRetention uses session retention separately from telemetry retenti
       INSERT INTO imm_session_telemetry (
         session_id, sample_ms, total_watched_ms, active_watched_ms, CREATED_DATE, LAST_UPDATE_DATE
       ) VALUES
-        (1, ${nowMs - 2 * 86_400_000}, 0, 0, ${nowMs}, ${nowMs}),
+        (1, ${nowMs - 200_000_000}, 0, 0, ${nowMs}, ${nowMs}),
-        (2, ${nowMs - 12 * 60 * 60 * 1000}, 0, 0, ${nowMs}, ${nowMs});
+        (2, ${nowMs - 10_000_000}, 0, 0, ${nowMs}, ${nowMs});
     `);
 
     const result = pruneRawRetention(db, nowMs, {
-      eventsRetentionMs: 7 * 86_400_000,
+      eventsRetentionMs: 120_000_000,
-      telemetryRetentionMs: 1 * 86_400_000,
+      telemetryRetentionMs: 80_000_000,
-      sessionsRetentionMs: 30 * 86_400_000,
+      sessionsRetentionMs: 300_000_000,
     });
 
     const remainingSessions = db
@@ -88,9 +87,9 @@ test('raw retention keeps rollups and rollup retention prunes them separately',
 
   try {
     ensureSchema(db);
-    const nowMs = Date.UTC(2026, 2, 16, 12, 0, 0, 0);
+    const nowMs = 1_000_000_000;
-    const oldDay = Math.floor((nowMs - 90 * 86_400_000) / 86_400_000);
+    const oldDay = Math.floor((nowMs - 200_000_000) / 86_400_000);
-    const oldMonth = toMonthKey(nowMs - 400 * 86_400_000);
+    const oldMonth = 196912;
 
     db.exec(`
       INSERT INTO imm_videos (
@@ -101,12 +100,12 @@ test('raw retention keeps rollups and rollup retention prunes them separately',
       INSERT INTO imm_sessions (
         session_id, session_uuid, video_id, started_at_ms, ended_at_ms, status, CREATED_DATE, LAST_UPDATE_DATE
       ) VALUES (
-        1, 'session-1', 1, ${nowMs - 90 * 86_400_000}, ${nowMs - 90 * 86_400_000 + 1_000}, 2, ${nowMs}, ${nowMs}
+        1, 'session-1', 1, ${nowMs - 200_000_000}, ${nowMs - 199_999_000}, 2, ${nowMs}, ${nowMs}
       );
       INSERT INTO imm_session_telemetry (
         session_id, sample_ms, total_watched_ms, active_watched_ms, CREATED_DATE, LAST_UPDATE_DATE
       ) VALUES (
-        1, ${nowMs - 90 * 86_400_000}, 0, 0, ${nowMs}, ${nowMs}
+        1, ${nowMs - 200_000_000}, 0, 0, ${nowMs}, ${nowMs}
       );
       INSERT INTO imm_daily_rollups (
         rollup_day, video_id, total_sessions, total_active_min, total_lines_seen,
@@ -123,9 +122,9 @@ test('raw retention keeps rollups and rollup retention prunes them separately',
     `);
 
     pruneRawRetention(db, nowMs, {
-      eventsRetentionMs: 7 * 86_400_000,
+      eventsRetentionMs: 120_000_000,
-      telemetryRetentionMs: 30 * 86_400_000,
+      telemetryRetentionMs: 120_000_000,
-      sessionsRetentionMs: 30 * 86_400_000,
+      sessionsRetentionMs: 120_000_000,
     });
 
     const rollupsAfterRawPrune = db
@@ -139,8 +138,8 @@ test('raw retention keeps rollups and rollup retention prunes them separately',
     assert.equal(monthlyAfterRawPrune?.total, 1);
 
     const rollupPrune = pruneRollupRetention(db, nowMs, {
-      dailyRollupRetentionMs: 30 * 86_400_000,
+      dailyRollupRetentionMs: 120_000_000,
-      monthlyRollupRetentionMs: 365 * 86_400_000,
+      monthlyRollupRetentionMs: 1,
     });
 
     const rollupsAfterRollupPrune = db

src/core/services/immersion-tracker/maintenance.ts

@@ -61,19 +61,19 @@ export function pruneRawRetention(
   const sessionsCutoff = nowMs - policy.sessionsRetentionMs;
 
   const deletedSessionEvents = (
-    db.prepare(`DELETE FROM imm_session_events WHERE ts_ms < ?`).run(eventCutoff) as {
+    db.prepare(`DELETE FROM imm_session_events WHERE ts_ms < ?`).run(toDbMs(eventCutoff)) as {
       changes: number;
     }
   ).changes;
   const deletedTelemetryRows = (
-    db.prepare(`DELETE FROM imm_session_telemetry WHERE sample_ms < ?`).run(telemetryCutoff) as {
+    db
-      changes: number;
+      .prepare(`DELETE FROM imm_session_telemetry WHERE sample_ms < ?`)
-    }
+      .run(toDbMs(telemetryCutoff)) as { changes: number }
   ).changes;
   const deletedEndedSessions = (
     db
       .prepare(`DELETE FROM imm_sessions WHERE ended_at_ms IS NOT NULL AND ended_at_ms < ?`)
-      .run(sessionsCutoff) as { changes: number }
+      .run(toDbMs(sessionsCutoff)) as { changes: number }
   ).changes;
 
   return {

src/core/services/jellyfin-remote.test.ts

@@ -263,7 +263,9 @@ test('reportProgress posts timeline payload and treats failure as non-fatal', as
     audioStreamIndex: 1,
     subtitleStreamIndex: 2,
   });
-  const expectedPostedPayload = JSON.parse(JSON.stringify(expectedPayload));
+  const expectedPostedPayload = Object.fromEntries(
+    Object.entries(structuredClone(expectedPayload)).filter(([, value]) => value !== undefined),
+  );
 
   const ok = await service.reportProgress({
     itemId: 'movie-2',

src/core/services/tokenizer/yomitan-parser-runtime.test.ts

@@ -1255,7 +1255,7 @@ test('dictionary settings helpers upsert and remove dictionary entries without r
   const deps = createDeps(async (script) => {
     scripts.push(script);
     if (script.includes('optionsGetFull')) {
-      return JSON.parse(JSON.stringify(optionsFull));
+      return structuredClone(optionsFull);
     }
     if (script.includes('setAllSettings')) {
       return true;

src/main/controller-config-update.test.ts

@@ -1,8 +1,18 @@
 import assert from 'node:assert/strict';
+import fs from 'node:fs';
+import path from 'node:path';
 import test from 'node:test';
 
 import { applyControllerConfigUpdate } from './controller-config-update.js';
 
+test('SM-012 controller config update path does not use JSON serialize-clone helpers', () => {
+  const source = fs.readFileSync(
+    path.join(process.cwd(), 'src/main/controller-config-update.ts'),
+    'utf-8',
+  );
+  assert.equal(source.includes('JSON.parse(JSON.stringify('), false);
+});
+
 test('applyControllerConfigUpdate replaces binding descriptors instead of deep-merging them', () => {
   const next = applyControllerConfigUpdate(
     {
@@ -52,3 +62,16 @@ test('applyControllerConfigUpdate merges buttonIndices while replacing only upda
   assert.deepEqual(next.bindings?.toggleLookup, { kind: 'button', buttonIndex: 0 });
   assert.deepEqual(next.bindings?.closeLookup, { kind: 'none' });
 });
+
+test('applyControllerConfigUpdate detaches updated binding values from the patch object', () => {
+  const update = {
+    bindings: {
+      toggleLookup: { kind: 'button' as const, buttonIndex: 7 },
+    },
+  };
+
+  const next = applyControllerConfigUpdate(undefined, update);
+  update.bindings.toggleLookup.buttonIndex = 99;
+
+  assert.deepEqual(next.bindings?.toggleLookup, { kind: 'button', buttonIndex: 7 });
+});

src/main/controller-config-update.ts

@@ -28,7 +28,7 @@ export function applyControllerConfigUpdate(
       [keyof RawControllerBindings, RawControllerBindings[keyof RawControllerBindings] | undefined]
     >) {
       if (value === undefined) continue;
-      (nextBindings as Record<string, unknown>)[key] = JSON.parse(JSON.stringify(value));
+      (nextBindings as Record<string, unknown>)[key] = structuredClone(value);
     }
 
     nextController.bindings = nextBindings;

src/main/runtime/anilist-post-watch-main-deps.test.ts

@@ -21,7 +21,7 @@ test('process next anilist retry update main deps builder maps callbacks', async
     now: () => 7,
   })();
 
-  assert.deepEqual(deps.nextReady(), { key: 'k', title: 't', episode: 1 });
+  assert.deepEqual(deps.nextReady(), { key: 'k', title: 't', season: null, episode: 1 });
   deps.refreshRetryQueueState();
   deps.setLastAttemptAt(1);
   deps.setLastError('x');

src/main/runtime/anilist-setup.test.ts

@@ -84,51 +84,63 @@ test('findAnilistSetupDeepLinkArgvUrl returns null when missing', () => {
 });
 
 test('consumeAnilistSetupCallbackUrl persists token and closes window for callback URL', () => {
+  const originalDateNow = Date.now;
   const events: string[] = [];
-  const handled = consumeAnilistSetupCallbackUrl({
+  try {
-    rawUrl: 'https://anilist.subminer.moe/#access_token=saved-token',
+    Date.now = () => 120_000;
-    saveToken: (value: string) => events.push(`save:${value}`),
+    const handled = consumeAnilistSetupCallbackUrl({
-    setCachedToken: (value: string) => events.push(`cache:${value}`),
+      rawUrl: 'https://anilist.subminer.moe/#access_token=saved-token',
-    setResolvedState: (timestampMs: number) =>
+      saveToken: (value: string) => events.push(`save:${value}`),
-      events.push(`state:${timestampMs > 0 ? 'ok' : 'bad'}`),
+      setCachedToken: (value: string) => events.push(`cache:${value}`),
-    setSetupPageOpened: (opened: boolean) => events.push(`opened:${opened}`),
+      setResolvedState: (timestampMs: number) =>
-    onSuccess: () => events.push('success'),
+        events.push(`state:${timestampMs > 0 ? 'ok' : 'bad'}`),
-    closeWindow: () => events.push('close'),
+      setSetupPageOpened: (opened: boolean) => events.push(`opened:${opened}`),
-  });
+      onSuccess: () => events.push('success'),
+      closeWindow: () => events.push('close'),
+    });
 
-  assert.equal(handled, true);
+    assert.equal(handled, true);
-  assert.deepEqual(events, [
+    assert.deepEqual(events, [
-    'save:saved-token',
+      'save:saved-token',
-    'cache:saved-token',
+      'cache:saved-token',
-    'state:ok',
+      'state:ok',
-    'opened:false',
+      'opened:false',
-    'success',
+      'success',
-    'close',
+      'close',
-  ]);
+    ]);
+  } finally {
+    Date.now = originalDateNow;
+  }
 });
 
 test('consumeAnilistSetupCallbackUrl persists token for subminer deep link URL', () => {
+  const originalDateNow = Date.now;
   const events: string[] = [];
-  const handled = consumeAnilistSetupCallbackUrl({
+  try {
-    rawUrl: 'subminer://anilist-setup?access_token=saved-token',
+    Date.now = () => 120_000;
-    saveToken: (value: string) => events.push(`save:${value}`),
+    const handled = consumeAnilistSetupCallbackUrl({
-    setCachedToken: (value: string) => events.push(`cache:${value}`),
+      rawUrl: 'subminer://anilist-setup?access_token=saved-token',
-    setResolvedState: (timestampMs: number) =>
+      saveToken: (value: string) => events.push(`save:${value}`),
-      events.push(`state:${timestampMs > 0 ? 'ok' : 'bad'}`),
+      setCachedToken: (value: string) => events.push(`cache:${value}`),
-    setSetupPageOpened: (opened: boolean) => events.push(`opened:${opened}`),
+      setResolvedState: (timestampMs: number) =>
-    onSuccess: () => events.push('success'),
+        events.push(`state:${timestampMs > 0 ? 'ok' : 'bad'}`),
-    closeWindow: () => events.push('close'),
+      setSetupPageOpened: (opened: boolean) => events.push(`opened:${opened}`),
-  });
+      onSuccess: () => events.push('success'),
+      closeWindow: () => events.push('close'),
+    });
 
-  assert.equal(handled, true);
+    assert.equal(handled, true);
-  assert.deepEqual(events, [
+    assert.deepEqual(events, [
-    'save:saved-token',
+      'save:saved-token',
-    'cache:saved-token',
+      'cache:saved-token',
-    'state:ok',
+      'state:ok',
-    'opened:false',
+      'opened:false',
-    'success',
+      'success',
-    'close',
+      'close',
-  ]);
+    ]);
+  } finally {
+    Date.now = originalDateNow;
+  }
 });
 
 test('consumeAnilistSetupCallbackUrl ignores non-callback URLs', () => {

src/release-workflow.test.ts

@@ -36,6 +36,13 @@ test('release workflow verifies generated config examples before packaging artif
   assert.match(releaseWorkflow, /bun run verify:config-example/);
 });
 
+test('release quality gate runs the maintained source coverage lane and uploads lcov output', () => {
+  assert.match(releaseWorkflow, /name: Coverage suite \(maintained source lane\)/);
+  assert.match(releaseWorkflow, /run: bun run test:coverage:src/);
+  assert.match(releaseWorkflow, /name: Upload coverage artifact/);
+  assert.match(releaseWorkflow, /path: coverage\/test-src\/lcov\.info/);
+});
+
 test('release build jobs install and cache stats dependencies before packaging', () => {
   assert.match(releaseWorkflow, /build-linux:[\s\S]*stats\/node_modules/);
   assert.match(releaseWorkflow, /build-macos:[\s\S]*stats\/node_modules/);

src/runtime-options.test.ts

@@ -0,0 +1,64 @@
+import assert from 'node:assert/strict';
+import fs from 'node:fs';
+import path from 'node:path';
+import test from 'node:test';
+
+import { RuntimeOptionsManager } from './runtime-options';
+
+test('SM-012 runtime options path does not use JSON serialize-clone helpers', () => {
+  const source = fs.readFileSync(path.join(process.cwd(), 'src/runtime-options.ts'), 'utf-8');
+  assert.equal(source.includes('JSON.parse(JSON.stringify('), false);
+});
+
+test('RuntimeOptionsManager returns detached effective Anki config copies', () => {
+  const baseConfig = {
+    deck: 'Mining',
+    note: 'Sentence',
+    tags: ['SubMiner'],
+    behavior: {
+      autoUpdateNewCards: true,
+      updateIntervalMs: 5000,
+    },
+    fieldMapping: {
+      sentence: 'Sentence',
+      meaning: 'Meaning',
+      audio: 'Audio',
+      image: 'Image',
+      context: 'Context',
+      source: 'Source',
+      definition: 'Definition',
+      sequence: 'Sequence',
+      contextSecondary: 'ContextSecondary',
+      contextTertiary: 'ContextTertiary',
+      primarySpelling: 'PrimarySpelling',
+      primaryReading: 'PrimaryReading',
+      wordSpelling: 'WordSpelling',
+      wordReading: 'WordReading',
+    },
+    duplicates: {
+      mode: 'note' as const,
+      scope: 'deck' as const,
+      allowedFields: [],
+    },
+    ai: {
+      enabled: false,
+      model: '',
+      systemPrompt: '',
+    },
+  };
+
+  const manager = new RuntimeOptionsManager(
+    () => structuredClone(baseConfig),
+    {
+      applyAnkiPatch: () => undefined,
+      onOptionsChanged: () => undefined,
+    },
+  );
+
+  const effective = manager.getEffectiveAnkiConnectConfig();
+  effective.tags!.push('mutated');
+  effective.behavior!.autoUpdateNewCards = false;
+
+  assert.deepEqual(baseConfig.tags, ['SubMiner']);
+  assert.equal(baseConfig.behavior.autoUpdateNewCards, true);
+});

src/runtime-options.ts

@@ -29,7 +29,7 @@ import { RUNTIME_OPTION_REGISTRY, RuntimeOptionRegistryEntry } from './config';
 type RuntimeOverrides = Record<string, unknown>;
 
 function deepClone<T>(value: T): T {
-  return JSON.parse(JSON.stringify(value)) as T;
+  return structuredClone(value);
 }
 
 function getPathValue(source: Record<string, unknown>, path: string): unknown {